Seminars
Simulation aspects of transport through artificial and biological membranes
Dr. Zeinab Rahimi - University of Freiburg
Location: Online via Webex: https://fu-berlin.webex.com/meet/roland.netz
Prof. Dr. Tetsuya Hiraiwa: Computational studies on the influence of mechanical perturbations due to actions of subnuclear molecules on chromatin organization and dynamics
Institute of Physics, Academia Sinica, Taipei City, Taiwan
Location: Seminar room 1.1.53 Department of Physics Arnimallee 14 14195 Berlin
Prof. Dr. Won Kyu Kim: Kinetic Model for the Desensitization of G Protein-Coupled Receptor
Korea Institute for Advanced Study (KIAS), Theoretical and Computational Soft Matter and Biophysics, Seoul, South Korea
Location: Seminar room 1.1.53 Department of Physics Arnimallee 14 14195 Berlin
Gustavo Madrigal: Hydrophobic Hydrating of the Polycyclic Aromatic Hydrocarbon (PAH) Anthracene in Amorphous Ice
Universitat Politecnica de Catalunya, Group of Characterization of Materials, Barcelona, Spain
Location: Online via Webex: https://fu-berlin.webex.com/meet/roland.netz
Fahim Faraji: The Influence of Confinement on Material Properties and Interfacial Thermodynamics
University of Antwerp, PLASMANT research group, Department of Chemistry -and- Condensed Matter Theory (CMT) research group, Department of Physics, Antwerp, Belgium
Location: online via Webex
Felix Riesterer: Redfield-pseudomodes theory
Albert-Ludwigs-Universität Freiburg, Quantum Optics and Statistics Group, Freiburg
Location: Online via Webex
Prof. Dr. Prabal K. Maiti: 2-TIPS and ordering in various active matter systems
Center for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore, India
Location: Lecture Hall A Department of Physics Arnimallee 14 14195 Berlin
Prof. Dr. Prabal K. Maiti: Charge transport in the D2 branch of Photosystem II and Electrical conductance of DNA and RNA
Center for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore, India Group seminar by AG Heyne
Location: Seminar room 1.4.03 Department of Physics Arnimallee 14 14195 Berlin
Dr. Andrea Auconi: Information-response inequalities
Ca' Foscari University of Venice, Department of Molecular Sciences and Nanosystems, Venice, Italy
Location: Seminar room T1 (1.3.21) Department of Physics Arnimallee 14 14195 Berlin
Dr. Tuhin Samanta: Anomalous elasticity and selection principle of the screening parameter in the mechanical response of granular amorphous materials
Weizmann Institute of Science, Department of Chemical and Biological Physics, Rehovot, Israel
Location: Online via Webex
Friederike Schubert: Free Energy Calculations of RNA Kissing Loops
Technical University of Munich, TUM School of Natural Sciences, Department of Bioscience, Biomolecular Dynamics Workgroup, Munich, Germany
Location: online via Webex
Subhajit Acharya: From Multidimensional non-Markovian Rate Theory to diffusion-entropy Scaling and Investigations into the validity of Stokes Law
Indian Institute of Science (IISc), Solid State and Structural Chemistry Unit, Bangalore, India
Location: Online via WebEx
Prof. Dr. Marcus Fulde: Through the labyrinth - How salmonella penetrates the gastrointestinal mucus
Freie Universität Berlin, School of Veterinary Medicine, Institute of Microbiology and Epizootics, Centre for Infection Medicine and CRC 1449 - Dynamic Hydrogels at Biointerfaces, Project leader of B05 - The Interplay of Microbiota with Mucus, Berlin
Location: Seminar room T1 (1.3.21) Department of Physics Arnimallee 14 14195 Berlin
Nirmalya Ghosh: Validation of Stokes-Einstein-Debye Relation by various classical water models AND Molecular basis of Dispersion of Single-Walled Carbon Nanotubes in Imidazolium based Room Temperature Ionic Liquids
Central University of Punjab, Department of Physics, Bhatinda, India
Location: online via Webex
Hikmat Binyaminov
University of Alberta, Faculty of Engineering, Department of Chemical and Materials Engineering, Edmonton, Alberta, Canada
Location: Online via Webex
Sudipta Mandal: Non-equilibrium phase transition in a system of active and passive colloidal suspension in two-dimensions
Indian Institute of Science Education and Research (IISER Mohali), Department of Physical Sciences, Mohali, India
Location: Online via Webex
Dr. Hanne Antila: Dielectric effects on ion mobility near plain and polymer-functionalized interfaces
University of Bergen, Faculty of Medicine, Department of Biomedicine, Bergen, Norway
Location: Seminar room T1 (1.3.21) Department of Physics Arnimallee 14 14195 Berlin
Prof. Dr. Ahmet Nihat Berker: Brain, Music, Liquid-Crystal Phase in Spongy and Chaotic Spin Glasses
Kadir Has University, Vice President - Dean of the Faculty of Engineering and Natural Sciences, Istanbul, Turkey
Location: Seminar room T1 (1.3.21) Department of Physics Arnimallee 14 14195 Berlin
Anna Pini: Molecular dynamics simulation of three periodic auxetic entanglements
University of Trento, Department of Physics, Statistical and Biological Physics, Trento, Italy and University of Potsdam, Institute of Mathematics, Applied Geometry and Topology, Potsdam
Location: Seminar room T1 (1.3.21) Department of Physics Arnimallee 14 14195 Berlin
Andreas Döll: Energetic particles in plasma physics
Technical University of Munich, TUM School of Natural Sciences, Munich
Location: Online via WebEx
Prof. Dr. Sandra Klinge: Multiscale material modeling in engineering
Technical University of Berlin, Institute of Mechanics, Department of Structural Mechanics and Analysis, Berlin
Location: Seminar room T1 (1.3.21) Department of Physics Arnimallee 14 14195 Berlin
Dr. Daniel Lammel: Modelling proteins on soil surfaces
Freie Universität Berlin, Department of Biology, Chemistry and Pharmacy, Institute of Biology, Ecology of Plants, Berlin
Location: Seminar room T1 (1.3.21) Department of Physics Arnimallee 14 14195 Berlin
Roshan Singh: Dynamic patterns and phase transitions in confined Active Particle Systems AND Feynman’s path integral approach - A novel method to break the symmetry to study off-center confined and exohedral atoms
Indian Institute of Technology, Department of Physics, Patna, India
Location: Online via Webex
Dr. Matej Kanduč: The mystery of nanobubbles: How come they exist?
Jožef Stefan Institute, Department of Theoretical Physics, Bio-Soft Matter Physics, Ljubljana, Slovenia
Location: Seminar room T1 (1.3.21) Department of Physics Arnimallee 14 14195 Berlin
Dr. Nikolai Severin: AFM imaging of amyloid fibrils
Freie Universität Berlin, Department of Physics and Integrative Research Institute for the Sciences (IRIS Adlershof), Humboldt Universität Berlin
Location: Room 1.14 (first floor) Arnimallee 20 14195 Berlin
Prof. Dr. Silvia Vignolini: Biometric colour engeneering from nature to applications
Max Planck Institute of Colloids and Interfaces, Potsdam and Department of Chemistry, University of Cambridge, UK
Location: Seminar room T1 (1.3.21) Department of Physics Arnimallee 14 14195 Berlin
Mohammad Javad Noohi: Simulating a microswimmer with star model at low Reynolds number
Sharif University of Technology, Department of Physics, Tehran, Iran
Location: online
The role of mechanics in growing tissues
Jens Elgeti, Foschungszentrum Jülich, Germany Theoretical Soft Matter and Biophysics
Location: 1.4.08
TU-Berlin - From Physics to Biology: Pulses, Fluctuations, Non-linearities... Living State
Prof. Matthias Schneider, Technische Universität Dortmund
Location: EW 202 Technische Universität Berlin · Institut für Theoretische Physik · Hardenbergstraße 36 · 10623 Berlin
Adsorption and Transport in Multiscale Porous Media
Prof. Benoit Coasne, Laboratoire Interdisciplinaire de Physique, CNRS/Université Grenoble Alpes, Grenoble, FRANCE
Location: Seminar Room T3 (1.3.48)
Supramolecular self-assembly of oppositely charged particles
Reinier van Buel, University of Eindhoven, The Netherlands
Location: Seminar Room T2 (1.4.03)
Description of catalytic rates in stimuli-responsive nanoreactors
Dr. Rafael Roa, EM-ISFM Soft Matter and Functional Materials, Helmholtz-Zentrum Berlin
Location: Seminar Room T 2 (1.4.03)
Trajectories of cellular motion - examples from bacterial swimming and amoeboid crawling
Prof. Dr. Carsten Beta, Institut für Physik und Astronomie, Universität Potsdam
Location: Seminar Room T 2 (1.4.03)
Nano-Structure of Solvate Ionic Liquids at Graphitic Interfaces: A molecular dynamics study
Samuel Coles, Oxford University, UK
Location: Seminar Room T2 (1.4.03)
Towards characterizing the dynamics of the intrinsically disordered protein Abeta42
Jason Klebes, University of Edinburgh
Location: Seminar Room T3 (1.3.48)
Control of foam film and wetting film stability by additon of electrolytes: Electrostatics vs. ionspecifity
Prof. Dr. Regine v. Klitzing, Stranski-Laboratorium, Institut für Chemie, Technische Universität Berlin
Location: Seminar Room T3 (1.3.48)
Polymer translocation through a nanopore
Dr. Jalal Sarabadani, Multiscale Statistical Physics Group, Department of Applied Physics (COMP), Aalto University, Espoo, Finland
Location: Seminar Room T2 (1.4.03)
Nukleosomen - und Chromatindynamik mit Fluoreszenzfluktuations- und Simulationsansätzen
Prof. Dr. Jörg Langowski,German Cancer Research Center (DKFZ), TP3, GERMANY
Location: Seminar Room T2 (1.4.03)
Electric interactions: A study of cellulose
Dr. Björn Stenqvist, Lund University, SWEDEN
Location: Seminar Room T2 (1.4.03)
Theory on linear viscoelasticity of a cytoskeletal network
Prof. Dr. Tetsuya Hiraiwa, Department of Physics, Faculty of Science The University of Tokyo, JAPAN
Location: Seminar Room T2 (1.4.03)
Entropic cost of folding and phase diagrams of polypeptides: Why are IDPs unfolded at room temperature?
Dr. Artem Badasyan, University of Nova Gorica, Slovenia
Location: Seminar Room T 3 (1.3.48)
The Role of Ion-Membrane Interactions in Membrane Pore Formation and Vesicle Fusion
Dr. Christoph Allolio, Academy of Sciences of the Czech Republic - IOCB, Prague and University of Regensburg
Location: Seminar Room T2 (1.4.03)
Ion-specific Excluded-Volume Effects on Hydrogel Swelling
Prof Arturo Moncho Jordá, Departamento de Física Aplicada, Granada
Location: Seminar Room T 3 (1.3.48)
Influence of domain size and temperature on structure and elastic fluctuations in complex lipid mixtures by global SAXS data analysis
Dr. Peter Heftberger, University of Graz, Institute of Molecular Biosciences, Graz, Austria
Location: Seminar Room T2 (1.4.03)
‘Soft' amplifier circuits based on field-effect ionic transistors
Dr. Niels Boon, Department of Materials Science & Engineering North-western University Evanston, IL 60208 (USA)
Location: Seminar Room T2 (1.4.03)
How the ideas of soft matter physics help us un-derstand cellular organization
Dr. Simone Reber, Humboldt-Universität zu Berlin, IRI for Life Sciences
Location: Seminarroom T3 (1.3.48)
Micro-hydrodynamics of Active Filament
Abhrajit Laskar, Institute of Mathematical Sciences, CIT Campus, Tharamani Chennai, India
Location: 1.4.08
Biomolecular stability and dynamics in the context of the solvating environment
Dr. Matthias Heyden, Max-Planck-Institut für Kohlenforschung, Theoretische Chemie, 45470 Mülheim an der Ruhr
Location: Seminar Room T2 (1.4.03)
Fibril Growth of Aβ40-Peptides - Thermodynamic and Kinetic Aspects
Dr. Nadine Schwierz, University of California, Berkeley (USA) Department of Chemistry
Location: Seminar Room T2 (1.4.03)
Molecular Organization and Translocation in Nuclear Pore Complexes
Dr. Igal Szleifer, Department of Biomedical Engineering, Northwestern University, Evanston, Illinois, USA
Location: Seminar Room E2 (1.1.53)
Transport of ions and particles in confinement: flow rectification&reversal and non-decaying hy-drodynamic interactions
Prof. Ulrich F. Keyser, Cavendish Laboratory, University of Cambridge, UK
Location: Seminar Room T3 (1.3.48)
Dynamics in polymer-solvent systems close to and below the glass transition temperature
Dr. Grégoire Julien Laboratoire Polymère et Matériaux Avancés, UMR 5268 CNRS/Solvay-Rhodia
Location: Seminar Room T2 (1.4.03)
Theory of DNA condensation: a multi-scale approach
Dr. Ruggero Cortini, Laboratoire de Physique Théorique de la Matière Condensée (LPTMC), Université Pierre et Marie Curie Paris, France
Location: Seminar Room T3 (1.3.48)
Simulation of large-scale structure formation in surfactant membranes under flow
Dr. Hayato Shiba Institute for Solid State Physics University of Tokyo, Chiba 277-8581, Japan
Location: Seminar Room T 2 (1.4.03)
Osmotic pressure induced coupling between co-operativity and stability of a helix-coil transition
Dr. Yevgeni Mamasakhlisov, Yerevan State University, Yerevan, Armenia
Location: Seminar Room T 2 (1.4.03)
How water layers on graphene affect folding and adsorption of TrpZip2
Dr. Emanuel K. Peter Institute of Computational Science, Lugano / Switzerland
Location: Seminar Room T 2 (1.4.03)
Flow induced phase separation, shear banding: the similarity with thermodynamic phase transitions and its universality
Dr. Katsuhiko Sato RIKEN Center for Developmental Biology Kobe, Japan
Location: Seminar Room T 2 (1.4.03)
Ion channel gating by diffusio-osmotic force
Dr. Douwe Jan Bonthuis Glasstone Fellow Rudolf Peierls Centre for Theoretical Physics, Oxford, UK
Location: Seminar Room T 2 (1.4.03)
Role of Solvent in Supramolecular Polymerisation
Prof. Paul van der Schoot, Eindhoven University
Location: Seminar Room T2 (1.4.03)
Symposium "Membranes: Interactions and structure, experiments and theory"
Prof. Michael Grunze, Dr. Matej Kanduc, Dr. Emanuel Schneck
Location: Seminar Room T2 (1.4.03)
The role of torsion in the closure and nucleation dynamics of DNA denaturation bubbles
Prof. Manoel Manghi, Laboratoire de Physique Théorique, Université Paul Sabatier, Toulouse, France
Location: T2 1.4.03
Electrifying membranes and lipid demixing
Dr. Rumiana Dimova, Max Planck Institute of Colloids and Interfaces, Science Park Golm, Potsdam
Location: Seminar Room T 2 (1.4.03)
Variational Approach to Molecular Kinetics
Computational Molecular Biology Group, Institute of Mathematics and Computer Science, Free University of Berlin
Location: 1.4.03
Electro-Osmosis of Polyelectrolyte Solutions and Flow Reversal
Dr. Yuki Uemastu, Kyoto University
Location: T2 1.4.03
Dynamics of DNA in vitro and in vivo
Prof. Jens-Christian Meiners, Director, LSA Biophysics, University of Michigan, USA
Location: 1.4.08
Kinetics of polymer loop formation in the presence of macromolecular crowding
Dr. Jaeoh Shin, University Potsdam
Location: T2 1.4.03
Is it possible to simulate molecular kinetics without molecular dynamics?
PD Dr. Marcus Weber, Computational Molecular Design, Zuse Institute Berlin (ZIB)
Location: Seminar Room T2 (1.4.03)
Theory on active stress in an actomyosin network
Dr. Tetsuya Hiraiwa, RIKEN Center for Developmental Biology, Kobe, Japan
Location: Seminar Room T2 (1.4.03)
Kirkwood-Schumaker forces and monopolar thermal Casimir interactions
Prof. Rudolf Podgornik, Faculty of Mathematics and Physics, University of Ljubljana,Slovenia
Location: Seminar Room T3 (1.3.48)
Curvature Dependence of Hydrophobic Solvation
Richard Gregor Weiß, Helmholtz-Zentrum Berlin für Materialien und Energie GmbH
Location: Seminar Room T3 (1.3.48)
Vesicles interacting with nanoparticles
Dr. Amir Bahrami, Department of Theory and Biosystems, Max Planck Institute of Colloids and Interfaces, Potsdam
Location: Seminar Room T 1 (1.3.21)
Electrophoresis of drops and bubbles
Professor Ehud Yariv, Department of Mathematics, Technion - Israel Institute of Technology
Location: Seminar Room T 1 (1.3.21)
The binding constant of membraneanchored receptors and ligands depends strongly on the nanoscale roughness of the membranes
Dr. Thomas Weikl, Max Planck Institute of Colloids and Interfaces, Potsdam Department of Theory and Bio-Systems
Location: Seminar Room T2 (1.4.03)
Dominant Pathways in the Conformational Dynamics of Large Proteins, from Atomistic Simulations
Dr. Pietro Faccioli, Laboratorio Interdisciplinare di Scienza Computazionale (LISC) Physics Department of Trento University,Trento, Italy
Location: Seminar Room T3 (1.3.48)
RNA folding with pseudoknots
Prof. Dr. Henri Orland, Institut de Physique Théorique, CEA, Saclay
Location: Lecture Hall A (1.3.14)
Salt induced hydrophobic collapse -- theoretical models vs. simulation
Dr. Jan Heyda, Helmholtz Zentrum Berlin
Location: Seminar Room T2 (1.4.03)
Some challenges in the computational investigations of carbohydrates
Dr. Mark Santer, Max Planck Institute of Colloids and Interfaces, Potsdam Dep. of Theory & Bio Systems Research Group "Carboyhdrates & Polysaccharides"
Location: Seminar Room T2 (1.4.03)
Analysis of multivalent effects using single molecule force spectroscopy (SMFS) on pyridine coordination compounds
Manuel Gensler, Humbold Universität Berlin
Location: Seminar Room T2 (1.4.03)
Surface Freezing
Dr. Benjamin Ocko, Department of Condensed Matter Physics and Materials Science, Brookhaven National Laboratory, Upton, N.J., USA
Location: Seminar Room T3 (1.3.48)
Cell motility and chemotaxis - from bacterial swimmers to amoeboid motion
Prof. Carsten Beta, Physics Department, University of Potsdam
Location: Seminar Room T2 (1.4.03)
Application of the Multivalent Concept to the Protein-Ligand Interaction"
Dr. Min Shan, Institut für Chemie und Biochemie, Freie Universität Berlin
Location: Seminar Room T2 (1.4.03)
Coarse-grained simulations of collective phenomena in lipid bilayers
Dr. H. Jelger Risselada, Max-Planck-Institute for Biophysical Chemistry, Göttingen.
Location: Seminar Room T2 (1.4.03)
Understanding ion currents in DNA translocation experiments
Stefan Kesselheim, Institute for Computational Physics, University of Stuttgart, Germany
Location: Seminar Room T2 (1.4.03)
Biomimetic Polymers for Biomedical Applications
Dr. Axel Neffe, Zentrum für Biomaterialentwicklung/Institut für Polymerforschung Helmholtz Zentrum, Teltow
Location: Seminar Room T3 (1.3.48)
Fluctuation-induced Resonances in Biopolymer Refolding Dynamics and Stretching
Dr. Won Kyu Kim, Department of Physics, Pohang University of Science and Technology (POSTECH), Republic of Korea
Location: Seminar Room T 2 (1.4.03)
Pulses, Channels and Single Molecules at Interfaces and the Physics of Blood Clotting
Prof. Matthias F. Schneider, Biological Physics Group, Boston University, Boston, USA
Location: Lecture Hall, 1.3.14
ssRNA thermodynamics: the method of constrained annealing
Prof. Yevgeni Mamasakhlisov, Faculty of Physics, Yerevan State University, Armenia
Location: Lecture Hall, 1.3.14
Theoretical QM/MM studies applied to enzyme catalysis: Thymidylate Synthase
Dr. Natal Kanaan Izquierdo
Location: 1.1.16
Shape of a eukaryotic cell: chemotactic migration of a deformable cell, and the contractility of an actin-myosin network
Dr. Tetsuya Hiraiwa, Center for Developmental Biology, RIKEN, Chuo-ku, Kobe, Hyogo, Japan
Location: Lecture Hall, 1.3.14
The Regulation of the H4 Tail Binding and Folding Landscapes via Lys-16 Acetylation
Prof. Garegin A. Papoian, Department of Chemistry and Biochemistry, Institute for Physical, Science and Technology, University of Maryland
Location: Lecture Hall, 1.3.14
Dielectric Spectroscopy of Hydration and Ion Association in Aqueous Electrolytes
Prof. Dr. Richard Buchner, Institut für Physikalische und Theoretische Chemie, Universität Regensburg
Location: Seminar Room T1, 1.3.21
Colloids between two and three dimensions
Prof. Dr. Sabine Klapp, Institut f. Theoretische Physik, Technische Universität Berlin
Location: Dahlem Center Seminar Room, 1.4.08
Understanding Structure, Function and Dynamics of the Enzyme E.coli Alkaline Phosphatase
Mari Chikvaidze,Computational Biophysical Chemistry Interdisciplinary Center for Scientific Computing University of Heidelberg
Location: Seminar Room T1, 1.3.21
Physicochemical principles of efficient information processing in biological cells
Dr.Frank Noe, DFG Research Center Matheon, FU Berlin
Location: 1.1.26
An overview for the properties of complex macromolecules: the case of bottlebrush and multi block copolymers and the self-assembly of DNAcoated colloids
Dr. Panagiotis E. Theodorakis, University of Vienna, Vienna, Austria; Vienna University of Technology, Vienna, Austria; CMS, Vienna, Austria; ViCoM, Vienna, Austria
Location: 1.3.21
Competing Interactions in Molecular Recognition from MM-PBSA Calculation
Dr. Parimal Kar, Max Planck Institute for Colloids and Interfaces, Potsdam
Location: 1.3.14
Stretching proteins - how macromolecules propagate mechanical forces
Dr. Frauke Graeter, Heidelberg Institut für Theoretische Studien und MPG-CAS Partner Institute for Computational Biology, Shanghai,China
Location: 1.3.14
Anisotropic dielectric spectrum of interfacial water
Dr. Stephan Gekle, Physik Departement, TU Munich, Garching
Location: 1.3.48
Casimir interaction and disorder effects
Dr. Ali Naji, School of Physics, Institute for Research and Fundamental Sciences (IPM), Tehran, Iran
Location: 1.4.08
Keywords
- AG Roland Netz, Bio Soft Matter Theory